Publications

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. Piecing together cis-regulatory networks: insights from epigenomics studies in plants. Wiley Interdisciplinary Reviews: Systems Biology and Medicine, 2017.

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. Network modeling of kinase inhibitor polypharmacology reveals pathways targeted in chemical screens. PLOS ONE, 2017.

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. Mapping genome-wide transcription-factor binding sites using DAP-seq. Nature Protocols, 2017.

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. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Nature Methods, 2017.

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. A transcription factor hierarchy defines an environmental stress response network. Science, 2016.

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. Mapping transcription factor interactome networks using HaloTag protein arrays. Proceedings of the National Academy of Sciences, 2016.

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. Epigenomic Diversity in a Global Collection of Arabidopsis thaliana Accessions. Cell, 2016.

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. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell, 2016.

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. Cryptochromes Interact Directly with PIFs to Control Plant Growth in Limiting Blue Light. Cell, 2016.

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. Temporal transcriptional response to ethylene gas drives growth hormone cross-regulation in Arabidopsis. eLife, 2013.

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. Simultaneous Reconstruction of Multiple Signaling Pathways via the Prize-Collecting Steiner Forest Problem. Journal of Computational Biology, 2013.

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. Linking Proteomic and Transcriptional Data through the Interactome and Epigenome Reveals a Map of Oncogene-induced Signaling. PLoS Computational Biology, 2013.

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. Processing and Subcellular Trafficking of ER-Tethered EIN2 Control Response to Ethylene Gas. Science, 2012.

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